PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.EL37U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 435aa MW: 47596.8 Da PI: 7.8376

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.EL37U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.4e-40	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Araip.EL37U 100 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 159 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-31	98	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MWGNPTAHKD LIGHKNLERE NRDTPETWNL IIVEVSSVSQ PETEEPSKRE LTSTQDKETT 60 EDLKSPTTTS SGIFENPKTP TNGGEQSETS VSQEKTPKKP DKILPCPRCN SMDTKFCYYN 120 NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKNSA ASHYRQIMVP EALQAAHHGL 180 HNAVLTFGPD SPLCDSMSSV LNIAEKATNG VVNGFHAPEA ATTFVSYGRD DDGNDHSVGV 240 SGTTSTSSER RGHASSHESA DKRVESFPPQ LTYFPSNSPW PYPWNSPMPP PPTFCPPGYP 300 MSIYTTPSYW AWNVPCISPQ SPAPGSGPNS PLGKHSRDGN IITPANSQKE KPNTESNNVL 360 IPKTLRIDDP SEAAKSSIWS TLGIKNEKAN SLNGGGLFKA FPSKGNDKSH VVEASPMLHA 420 NPAALTRSLT FHERT

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MWGNPTAHKD LIGHKNLERE NRDTPETWNL IIVEVSSVSQ PETEEPSKRE LTSTQDKETT  60
EDLKSPTTTS SGIFENPKTP TNGGEQSETS VSQEKTPKKP DKILPCPRCN SMDTKFCYYN  120
NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKNSA ASHYRQIMVP EALQAAHHGL  180
HNAVLTFGPD SPLCDSMSSV LNIAEKATNG VVNGFHAPEA ATTFVSYGRD DDGNDHSVGV  240
SGTTSTSSER RGHASSHESA DKRVESFPPQ LTYFPSNSPW PYPWNSPMPP PPTFCPPGYP  300
MSIYTTPSYW AWNVPCISPQ SPAPGSGPNS PLGKHSRDGN IITPANSQKE KPNTESNNVL  360
IPKTLRIDDP SEAAKSSIWS TLGIKNEKAN SLNGGGLFKA FPSKGNDKSH VVEASPMLHA  420
NPAALTRSLT FHERT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.EL37U

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-63	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016190923.1	0.0	cyclic dof factor 1
Refseq	XP_025639089.1	0.0	cyclic dof factor 1 isoform X2
Swissprot	Q8LFV3	4e-85	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445DNU3	0.0	A0A445DNU3_ARAHY; Uncharacterized protein
STRING	XP_004505416.1	1e-168	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-77	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]