PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EV6EL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 229aa    MW: 25299.2 Da    PI: 10.1844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EV6ELgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-06124150530
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                  hn++Er R +ri +++  L+el+P+ +
  Araip.EV6EL 124 HNIAERLRKERIAERIRALQELVPSvN 150
                  9***********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.98E-7117151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.38E-4117151No hitNo description
PROSITE profilePS5088810.055119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-6121151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLIVAVAALT IALLRRSSHH RLLYPSSRGI YLREATAFQQ STELGLNLDQ GKGADRVTAP  60
EVGFLNPPEE ASGSGKHFHD DVLDARAKNV FHGQPMPTTI PAAPHPPTMR PRVRARRGQA  120
TDPHNIAERL RKERIAERIR ALQELVPSVN KVCNCSNAEQ AFSFFDSACS ALLPCAIRFC  180
PNFHLLLGCL LAKMEAEKRS LWSWTASIEK RSLFPNAKSV ALGAEKRSL
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EV6EL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029147070.15e-95transcription factor UNE12-like
SwissprotO227689e-30UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A444Z5I71e-60A0A444Z5I7_ARAHY; Uncharacterized protein
STRINGevm.model.supercontig_52.975e-48(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-25bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]