PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EZD0N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 500aa    MW: 57207.3 Da    PI: 9.505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EZD0NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.51.9e-1761147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ +k++   +ei+++  +Cs+egk +++ +     ++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.EZD0N  61 KFYKNYAKAAGFSTRVRCTKRK--GNEIKNQLITCSREGKWKSKISL---IEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147
                  6***************987776..7889**************99887...999***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-1561147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186301337IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4303334IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4312339IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYDFE SNEVPKPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG  60
KFYKNYAKAA GFSTRVRCTK RKGNEIKNQL ITCSREGKWK SKISLIEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRHLYEHR HIWVPIDLDH  180
HFWAGIISTQ RSESMHSFFN KYITRNSLLI QFVKQYDNCL GSREQAERES DAADFHTVIL  240
CATKSSIEAQ FQDAYTHAKF REVQARFRGK ANCITRLKNS ALGYSVYEVG EQVSSSIFNK  300
FVVTYDSVAA EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRHTH  360
IKSSHDEPLM EPRSKRFDQL VFRSQNICEF ASESEELTAI LHRAYDNVMA EMESLKAKRK  420
GTSSLSHEDA NLESVNELQS PPRIRTRGRP KNRLGSKLDK QIANATKKKK TKVLSKINLF  480
DAASVVHSNS SQYQGHVMNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EZD0N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-32FAR1 family protein