PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.F3W8Q

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 354aa MW: 40124.1 Da PI: 4.6892

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F3W8Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	14	42	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEdell +++k G g+W++ ++ Araip.F3W8Q 14 KGKWTEEEDELLTKYIKANGEGSWRSLPK 42 79***********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-10	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.58E-7	8	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.726	9	66	IPR017930	Myb domain
Pfam	PF00249	2.0E-6	14	42	IPR001005	SANT/Myb domain
CDD	cd00167	8.56E-4	16	43	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-5	86	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGRAPCCEKV GLKKGKWTEE EDELLTKYIK ANGEGSWRSL PKNAVVGIFK ACWWGAHTLT 60 IVMKVVRKVA TQTEDGDDLM GEGLRWVNYL KGGIKRGNFS AEEEDTIVNL QASFGNRILE 120 VPQIRAPNLR IVFNGFTDVL PPKPRPRGIR SSRSSIIIKN NTQNPKDTAP HKNKHEDFLI 180 PAPSTPFIYS EALFNTMEDF MVLDMDLDFM KFSTTVLKAE DDGEEEKVHW TTMYEKQMID 240 EQVDHKVGIL NEESISTSNN SLGVDQTREG SSNDNVNNKM SSNGESGECW KVGINENNHH 300 LDIESIMDFN NGSVNRENLL TWLWEDDWES DCIKLAEMLG PHNQIDDIVS WLLS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGRAPCCEKV GLKKGKWTEE EDELLTKYIK ANGEGSWRSL PKNAVVGIFK ACWWGAHTLT  60
IVMKVVRKVA TQTEDGDDLM GEGLRWVNYL KGGIKRGNFS AEEEDTIVNL QASFGNRILE  120
VPQIRAPNLR IVFNGFTDVL PPKPRPRGIR SSRSSIIIKN NTQNPKDTAP HKNKHEDFLI  180
PAPSTPFIYS EALFNTMEDF MVLDMDLDFM KFSTTVLKAE DDGEEEKVHW TTMYEKQMID  240
EQVDHKVGIL NEESISTSNN SLGVDQTREG SSNDNVNNKM SSNGESGECW KVGINENNHH  300
LDIESIMDFN NGSVNRENLL TWLWEDDWES DCIKLAEMLG PHNQIDDIVS WLLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F3W8Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025678036.1	0.0	transcription factor MYB58-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62610.1	8e-29	myb domain protein 11