PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.F4UUL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 653aa    MW: 68645.1 Da    PI: 8.3894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.F4UULgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.5e-124974227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C ++++tG+C yG+rC+F+H++
  Araip.F4UUL 49 DEADCIYYLKTGFCGYGSRCRFNHPR 74
                 6799********************96 PP
2zf-CCCH39.87.4e-1395119327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC++f+rtG Ck+G++Ck++H++
  Araip.F4UUL  95 QPLCQYFMRTGSCKFGSSCKYNHPR 119
                  79*********************96 PP
3zf-CCCH37.93e-12281305226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG+Ck+G++C+++H+
  Araip.F4UUL 281 DQPECQYYMKTGECKFGPSCRYHHP 305
                  689*********************8 PP
4zf-CCCH37.93e-12474498226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG+Ck+G++C+++H+
  Araip.F4UUL 474 DQPECQYYMKTGECKFGPSCRYHHP 498
                  689*********************8 PP
5zf-CCCH30.85.1e-10521545327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C ++ + G+Ck+G+ CkF H++
  Araip.F4UUL 521 APPCTHYTQRGICKFGPACKFDHPM 545
                  689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.5E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3144775IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-64975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-692119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.32492120IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-697119IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23279307IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5285309IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6472499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23472500IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9474498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5475499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5478502IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6518545IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737518546IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7521545IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5522548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4523543IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MERYGRPGEG PQPDPPPEWN VGAGDTGLEE SMWKLGLGGG TESYPQRPDE ADCIYYLKTG  60
FCGYGSRCRF NHPRDRGAVI GAARSGGEYP ERAGQPLCQY FMRTGSCKFG SSCKYNHPRQ  120
AAGTPALVSL NYYGYPLRVP AGVQIPAPSP VPPVSPLPVQ VPSPLYPTVQ PPSGPSQQQY  180
SVLVARPPLL PGSLVQGPYG PVVVSPAMVP FPGWNPYQAQ ATSPLLPSST PSNVGPTQLY  240
RITQLPSQAT GYSAPYQPSG PSVDPSGSST QKENPYPERP DQPECQYYMK TGECKFGPSC  300
RYHHPSDLNA PKGNVALSPV GLPLRPVSIT FQRLCVQIPA PSPVPPVSPL PVQVPSPLYP  360
TVQPPSGPSQ QQYSVLVARP PLLPGSLVQG PYGPVVVSPA MVPFPGWNPY QAQATSPLLP  420
SSTPSNVGPT QLYRITQLPS QATGYSAPYQ PSGPSVDPSG SSTQKENPYP ERPDQPECQY  480
YMKTGECKFG PSCRYHHPSD LNAPKGNVAL SPVGLPLRPG APPCTHYTQR GICKFGPACK  540
FDHPMGSLSY SPSASSLADM PVAPYPVGSS MGTLAPSSSS SELRPELASG LSKESVSSRM  600
SSSMSTSSGS VGLTLSTAGP ISQSGTQPSA QSSSSSATAS SAATSSATSH TSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.F4UUL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1497161e-102BT149716.1 Lotus japonicus clone JCVI-FLLj-12C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197136.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU41e-100C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A4P1R2N50.0A0A4P1R2N5_LUPAN; Uncharacterized protein
STRINGGLYMA07G37980.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.25e-85C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]