PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.F87BT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 424aa    MW: 48909.5 Da    PI: 8.2519
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.F87BTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.97e-1859145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.F87BT  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1559145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.235304340IPR007527Zinc finger, SWIM-type
PfamPF044345.0E-5306337IPR007527Zinc finger, SWIM-type
SMARTSM005750.0046315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDHSTSASQL NPGEVDYEFE SNEVPEFLTR CIVQPLSVVD DELVPKVRMT FTTLEDAEKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE ADRHIWVPIY  180
LDHHFWAGMR STQRSESMHS FFNKYITRNS SLIQFVKQYD NCLGSREQAE RESDAADFHT  240
VIPCATKSSI EAQFQDAYTH AKFREVQAQF RGKANCITRL KNSALSYSVY EVGEQVSSSI  300
FNKFVVTYDS VAAEVKCECL LFESRGILCR HALSVLSFEQ ASQVSPRYIL ERWSKKIKRR  360
HTHIKSSHDE PLMEPRSKRF DQLVFRSQNI CEFASESEEL TAILHRAYDN VMAEMEALKN  420
KPKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.F87BT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-173protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-34far-red elongated hypocotyls 3