PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.F8CZF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1039aa    MW: 114617 Da    PI: 6.7475
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.F8CZFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Araip.F8CZF 129 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 223
                  99*****************************9545444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Araip.F8CZF 224 LLGIRRA 230
                  ****997 PP
2Auxin_resp122.82.5e-40255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Araip.F8CZF 255 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-42119258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-41121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-18128220No hitNo description
SMARTSM010191.9E-22129231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843129231IPR003340B3 DNA binding domain
PfamPF023622.1E-20129230IPR003340B3 DNA binding domain
PfamPF065073.2E-35255338IPR010525Auxin response factor
PROSITE profilePS5174527.0029271011IPR000270PB1 domain
PfamPF023098.5E-79271012IPR033389AUX/IAA domain
SuperFamilySSF542772.45E-69411005No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MKTQPEPAAV VAVPNPEEKK SINPELWQAC AGPLVNLPPA GTHVFYFPQG HSEQVAASLK  60
KDVDGQIPNY PNLPSKLLCL LHSVTLHADP ETDEVYAQMT LQPVPSYDKE ALLRSDLALK  120
SNKAQPEFFC KQLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQELV ARDLHDNVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA NRQPANISSS  240
VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY SHQISPGMRF  300
RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP  360
RTMPWLGDDM CMKDPQGLPG MSLVQWMNMQ QNPSLANSMQ PNYVPSLPGS VLQNLPGADI  420
SRQLGFSSSQ IPQPNNVAFN TQRLLQTAQQ LDHLQKLPST SVNLGTVMQP QQQLGDISQQ  480
SRQSLGSQTL PQSQVQAQIL HPQNLVQTNN ILQQQQSSIQ NHQFNRSVPQ NPPQQQQQQQ  540
TIMGQNQQQT MVPSTIPDHV QQLQMSDNQI QLQLLQKLQQ QQQTLLAQQS ALQQPSQLAQ  600
IQDQQRQLLD AAQSFSRLVP PGQVLEIPPV HQNSLPESNA ITNQMTKANG RSNIHISHLP  660
QQPKLQQQSG LLPEMSGQMA LPPTPSPNQL SAAGSGILNG AAVAGQSVIT DDVPSCSTSP  720
STNNSASAVP LLINSRLHRS SITADDMAQS TATLLSSGAL ETMSSGANMV KDLQPKSEVK  780
PSLNISKNQN QGSLHQTYLN GAAAQTDYLD TSSSTTSVCL SQSDAHMHQN NNPMSYNPQS  840
MLFRDNSQDG EVQADTRSNV PYGNNVDNQM GMPLNPDSLL PKGTVGMGKD MSNNFSSGDD  900
SSFLNRGGWA PPPPPPPLPA PQFQRMRTYT KVYKRGAVGR SIDITRYSDY EELKHDLARR  960
FGIEGQLEDR HRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD  1020
FGNASLPNQA CSSSDGGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681835947388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.F8CZF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203852.10.0LOW QUALITY PROTEIN: auxin response factor 19-like
TrEMBLA0A444YZC10.0A0A444YZC1_ARAHY; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19