PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.F8RKD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 269aa    MW: 30834.3 Da    PI: 10.2277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.F8RKDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
      Araip.F8RKD  81 RGNITLQEQILILDLHFRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717862077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-105287IPR009057Homeodomain-like
PROSITE profilePS500904.5885475IPR017877Myb-like domain
SuperFamilySSF466893.34E-1961126IPR009057Homeodomain-like
PROSITE profilePS5129421.50476130IPR017930Myb domain
SMARTSM007174.1E-1380128IPR001005SANT/Myb domain
PfamPF002491.5E-1381124IPR001005SANT/Myb domain
CDDcd001673.21E-985124No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1788125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTLLNKFRIS PAWIIRTIIS SPLLLIVSIQ LVLNRLHVLS HSLFNYDLSK LIMKKISSGL  60
KRSGKSCRLR WLNYLRPDVR RGNITLQEQI LILDLHFRWG NRWSKIAQHL PGRTDNEIKN  120
YWRTRVIKQA KQLKCDVNSK QFRDALRYVW MPRLLERLHP APQKLTNQTE PETQTGVLVS  180
NRNGSDSGPL LCAKQSNCLS DSSSGQSASV GNQWSSFNNQ LLFEQGTNGN GHSCGGGGES  240
LEYLWNDENV WFLQQQLCDD LEVKFNSLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-15561223097MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-155612253120MYB TRANSFORMING PROTEIN
1mse_C2e-15561223097C-Myb DNA-Binding Domain
1msf_C2e-15561223097C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.F8RKD
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966859.10.0transcription factor MYB108-like isoform X1
SwissprotQ10MB41e-60MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A444XI221e-155A0A444XI22_ARAHY; Uncharacterized protein
STRINGAES616082e-78(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-59myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]