PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FF76C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 464aa    MW: 53008.7 Da    PI: 6.8241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FF76CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-066076522
                 --SGGGGTS--TTTTT-S CS
      zf-CCCH  5 lCrffartGtCkyGdrCk 22
                 +C f+++ G+C yG++C+
  Araip.FF76C 60 ICLFYQK-GYCAYGSQCR 76
                 799****.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.33053IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7843454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2775582IPR000571Zinc finger, CCCH-type
SMARTSM003560.00485681IPR000571Zinc finger, CCCH-type
SMARTSM0035651155179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.549159180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.5E-9206289IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578509.42E-12212276No hitNo description
CDDcd001621.02E-4218272No hitNo description
PROSITE profilePS5008912.312219270IPR001841Zinc finger, RING-type
PfamPF000979.6E-7219269IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.0E-6219269IPR001841Zinc finger, RING-type
PROSITE patternPS005180243252IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.022299327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.873299328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
REKKKALCRQ NTNSITLRKS FIDRFRHGQR QKQQFYARGT CLKGELCCFS HERNEASSDI  60
CLFYQKGYCA YGSQCRNRHV KPSQASASAN GPVSLVSQSA MTHSAAKGKF TWVRKADTKV  120
LSPTDKHTSS LQHKNQHSQG THCEVGESST AAMLDENLFC EFDAANCTSG DKCTKIHGIL  180
CLYCRKPCLH PTNLKQRSNH FKICKEKAEI MKNSQDIECS VCLERVLLKP RPSRRKFGLL  240
SECDHPFCLD CIISWRNLAP TNAMDCPVCR KHSSFYVQSD IWYATKEEKQ AIIDNYKANC  300
KLIDCKYFKF GTRQCPYGTS CMYKHAVKPV LREQRQNRPR PQIGGDNLNE YDIMSQLSEF  360
DLHPHEFYSI LKDMEWFDDM SAMEKMALAD ELAGPTYGDS HFFPQDDFFD SDDDFDDEEF  420
DPIDAAISSM MMSGMPVFGF SDDEYSDNEA RDGKDSDGKS IDDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FF76C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171386.10.0E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_020965547.10.0E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_025671888.10.0E3 ubiquitin-protein ligase makorin isoform X1
TrEMBLA0A444XYT00.0A0A444XYT0_ARAHY; Uncharacterized protein
STRINGGLYMA15G42820.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3034322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-76C3H family protein