PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FG5GV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 246aa    MW: 27412.5 Da    PI: 7.2545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FG5GVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.13.8e-15101190189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  ++YneY++  GFsv+  +++k    g+   ++ +  +e +++++++++++++ +r+ t +gC+a++kv+ ++ +g+w v+++  +HnH++
  Araip.FG5GV 101 DYYNEYGRIKGFSVQGGTQNKAGGGGRNNLANIRVLEERRARRKTHRKDRKKDPRPITWCGCEARIKVHVDDaSGRWFVEQFFDNHNHPM 190
                  69********************77777777777777777777666667899*********************9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-12101191IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDHTGQRDSQ PNGFVEPNYE FSSNFDRVHA SQDADDGMSG EIVPVEEAEA MDSSAADADI  60
DAEAGVRIVE GIGSFGAIKF SSLTAKDVLT TEFTSLQAAY DYYNEYGRIK GFSVQGGTQN  120
KAGGGGRNNL ANIRVLEERR ARRKTHRKDR KKDPRPITWC GCEARIKVHV DDASGRWFVE  180
QFFDNHNHPM LDARFRGLSR SHRAVKVGDL HQINSMRKSG LRVPTIFCVF ANQSGGFETI  240
GTYIMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139151RARRKTHRKDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FG5GV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192260.11e-126protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025639519.11e-126protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0R91e-137A0A444X0R9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-07FAR1-related sequence 5