PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FH7NN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 353aa    MW: 41020 Da    PI: 6.2053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FH7NNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001392115123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C+ Cgk ++++ +Lk+H r  H
  Araip.FH7NN  92 YRCSVCGKKCRTNLDLKKHFRQlH 115
                  9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10106.4E-81291IPR029060PIN domain-like
SuperFamilySSF576674.28E-589120No hitNo description
Gene3DG3DSA:3.30.160.605.6E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001792115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.80192120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061672.40E-11121251No hitNo description
Gene3DG3DSA:3.40.50.10106.4E-8179236IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVKNNQGIYT PKHPKVVVLW DLDNKPPRGP PYDAARSLTR LATHFGHIVD ISAYANRHTF  60
IHLPQWVLQD RRQRKHLDVL ERKGLVVPSE PYRCSVCGKK CRTNLDLKKH FRQLHERERQ  120
KKLNRMRSLK GKKRQRFKER FIQGNEKYNE AARLMFTRLT VVGYGLASEL RRAGVYVKTV  180
EDKPQAADWA LKRQMQHSMT RGIDWLVLVS DDSDFAEMMR RARERELGTV VVGDWDRALG  240
RQADLWFPWI DVENGNVSEK DLVIEKNRSR AQRDGFVVEE DDDGFFSLSR FDCGGGHGSS  300
DLDELVDELA AVRTDFTAAI SDEDEDDYML GSSEDEYIED YDEDSDQEDD GFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FH7NN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205820.10.0uncharacterized protein LOC107646141
RefseqXP_025663095.10.0uncharacterized protein LOC112758600
TrEMBLA0A444YWE30.0A0A444YWE3_ARAHY; Uncharacterized protein
STRINGGorai.003G099900.11e-162(Gossypium raimondii)
STRINGGorai.010G022000.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-140C2H2-like zinc finger protein