PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FJL3S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 485aa    MW: 55922.7 Da    PI: 9.8935
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FJL3SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.5e-1743129191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++Y k +GFs+r+++ +++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.FJL3S  43 KFYRNYTKAAGFSTRVRSRNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCFARIYIHTLKdVGAWIISKVVLDHSHPCCP 129
                  6***************987776..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1443129IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDDSTSDSQL NQGEVDFEFE SNKVFEFVPK VGMTFTTLGD AGKFYRNYTK AAGFSTRVRS  60
RNRKENEIKN QLITCSREGK WKSKISPTEK TNPTAGLNCF ARIYIHTLKD VGAWIISKVV  120
LDHSHPCCPS KVEMLKQHRE LSMFIRRTIE NNEEANRHIW VPIYLDHHFW AGMRSTQRSE  180
SMHLFFNKFI TRNSLLIQFV KQYDNCLGSR EQAERESDAA DFHTVIPCAT KSSIEAQFQD  240
VYTHQKFREV QAQFRGKANC ITRLTSFALG YSVYEVREQV SSSIFNKFVV TYDSVAAEVK  300
CQCLLFESRG ILYRYALSVK KVKRRHTHIK SSHDEPLLEP RSKRFDELVF RLQNICKFAS  360
KSEELTAILH RACDNIMVEM ESLKAKRKGT SSLSHEDANL ESVNELQSPT RIRTRGRPKN  420
RLGSKLDKQI ANSSKKKKTK VLNELNLFDA ASVVHSNSSQ YQGHNPGSIF YSEVVHLVLQ  480
LKRIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FJL3S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-20far-red elongated hypocotyls 3