PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.FRS9U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 112aa MW: 13156.9 Da PI: 9.0368

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FRS9U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.3	2.8e-09	44	106	23	87
FAR1 23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 k+++ +++ s+eg++e++ k+ + r + t Cka++ v +++ +++w+v+klel+H+H Araip.FRS9U 44 KESRIPINQLIHYSREGYQESRVKA---ATRVKRITIARCKARMYVMLDRkKDNWMVSKLELKHTH 106 3344456666677999999999988...7788889999*******9998************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-6	47	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MDQSIYEEAS YDTAYDVSDH SNFIDVNVPS LSVEDIQRVD KNKKESRIPI NQLIHYSREG 60 YQESRVKAAT RVKRITIARC KARMYVMLDR KKDNWMVSKL ELKHTHCQAS YA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	91	RCKARMYVMLDRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FRS9U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015967189.1	1e-43	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445CAQ0	1e-36	A0A445CAQ0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17