PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FW1RB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 227aa    MW: 25898.3 Da    PI: 6.5094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FW1RBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.87.3e-2375169190
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYneY++  GFs+r+sk  +      +g i+++ fvCs++g+r+ ++ + ++++  +r++ r+gC+a++kv+ ++ +g+w+v+ ++ eHnHe+ 
  Araip.FW1RB  75 DFYNEYGRIKGFSIRRSKVGRCkkaGSEGDIIWQIFVCSRQGERDAKHIHrNDRKMDPRPVMRCGCNARIKVHVDSkNGRWYVEFFSDEHNHEML 169
                  6***************98766622256789**************9998774677788*****************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2075169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGCKVDEDPI ENETFVAETE SVLIGASHSD DQRDVIVLDG IGLFGAIDFD AIDFDALRAE  60
EIMMIEFVDL KTAYDFYNEY GRIKGFSIRR SKVGRCKKAG SEGDIIWQIF VCSRQGERDA  120
KHIHRNDRKM DPRPVMRCGC NARIKVHVDS KNGRWYVEFF SDEHNHEMLE ARFRGMMRSH  180
RAIKTGDLHQ INTMRSSGLR VPTIFRAFAN QSGGFEMVGF QSSCVGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FW1RB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025673381.11e-157protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D6S41e-136A0A445D6S4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1-related sequence 5