PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FXA4L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 685aa    MW: 75867.2 Da    PI: 7.4979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FXA4LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-0694120326
                  S---SGGGGTS...--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                  + lC+  a+tG    C+y d+C+F+H+
  Araip.FXA4L  94 RNLCPEVAKTGdvtSCPYKDKCRFSHD 120
                  679***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.92591122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.24135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.1E-69329572IPR013785Aldolase-type TIM barrel
CDDcd028017.17E-89333568No hitNo description
SuperFamilySSF513956.3E-62333646No hitNo description
PfamPF012073.9E-49336573IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360417435IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MESEESRSQL PGDEATAVEG TAEQLVARAI APIKKEFLRP PPVRSSSADN EAAAAAAATN  60
DNKNPAHPGS GLLKDKKSKR QLKRERRQEQ KSARNLCPEV AKTGDVTSCP YKDKCRFSHD  120
IEAFKAQKPA DLEGQCPFVK SGGPCPYGLA CRFSSTHEDG VPSSTGHLNG LKNPSEVNGL  180
SKDVQKLLWK NKMRFSKADA KLKSLGLLGP KSKMKNLENK DGENGGSNKC SLSDDNGCCE  240
VASDLGPKLE EAIKDDDADA KYETDELCPQ KRRKTGVNCD PSEIEKGVNV TEEIERGSIN  300
TEPEAGCDTL TIKTDLSLKL HPREKKLIDF RDKLYLAPLT TVGNLPFRRV CKVLGADVTC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELIEQ ECTIDFIDIN  420
MGCPIDIVVN KGAGSALLTK PMRMKNIVEV ASSTVDKPIT IKVRTAYFEG KNRIDSLIAD  480
MGSWGAGSVT IHGRSRQQRY SKLADWDYIY QCGRKAPKTL PVVGNGDVFS FVDWNNHRTA  540
CPELATCMVA RGALIKPWIF TEIREQRHWD ISSGERLNIL KEFVHFGLEH WGSDTKGVET  600
TRRFLLEWLS YTCRYVPVGL LEVIPQRINW RPPSYYGRDE LETLMASDSA ADWIRISEML  660
LGKVPDGFTF APKHKSNAYD RAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A7e-2633057727266tRNA-dihydrouridine synthase B
6ei9_B7e-2633057727266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FXA4L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992370.0KM399237.1 Glycine max FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166422.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
RefseqXP_025665455.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A445BRW80.0A0A445BRW8_ARAHY; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGGLYMA04G00940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]