PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G0Q9N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 436aa    MW: 47181.7 Da    PI: 7.5696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G0Q9NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.2e-33154210259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+a+Cpvkkkvers  d++++ i+Y+geHnh+
  Araip.G0Q9N 154 DDGYNWRKYGQKQVKGSEFPRSYYKCTHASCPVKKKVERSL-DGHITAIIYKGEHNHQ 210
                  8****************************************.***************8 PP
2WRKY107.85.3e-34320378159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Araip.G0Q9N 320 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 378
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30147212IPR003657WRKY domain
SuperFamilySSF1182903.79E-26151212IPR003657WRKY domain
SMARTSM007741.5E-36153211IPR003657WRKY domain
PfamPF031069.1E-26154210IPR003657WRKY domain
PROSITE profilePS5081124.088154212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37305380IPR003657WRKY domain
SuperFamilySSF1182907.06E-30312380IPR003657WRKY domain
PROSITE profilePS5081138.836315380IPR003657WRKY domain
SMARTSM007741.3E-39320379IPR003657WRKY domain
PfamPF031062.7E-26321378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVGGGGNGER PPWKAANSGG GSLFGGGFSP GPMTLISSFF GGDDGNKSFS QLLAGAMASP  60
TAAAGTSGLI DSPSALFSSS QVPLGHQQAL LAQVTSQGTQ LHSSMQVQPQ DSLQTMSATT  120
TFAQVHAANT SNNNTNPHMV EPSSSSLNVD KPADDGYNWR KYGQKQVKGS EFPRSYYKCT  180
HASCPVKKKV ERSLDGHITA IIYKGEHNHQ RPNRRSKDAA MASSEGSNMQ GNADYHHDHG  240
TCANHPRMDA ESSQATGEHL SGTSDSEEVG DHENEVDDKI VEPDPKRRNT EVTHSDPDSS  300
HRTVTEPRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG CNVRKHVERA  360
STDPKAVITT YEGKHNHDVP AAKINSHTIA NNSSSQFKSQ NSNIPQMHGF GSKGIGVNEQ  420
QQQPVARLRL KEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-44154381878Probable WRKY transcription factor 4
2lex_A3e-44154381878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G0Q9N
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202737.10.0probable WRKY transcription factor 4
RefseqXP_016202740.10.0probable WRKY transcription factor 4
RefseqXP_025654648.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-125WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A445D6J70.0A0A445D6J7_ARAHY; Uncharacterized protein
STRINGGLYMA01G06550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-125WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]