PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G19AB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 147aa    MW: 16706.1 Da    PI: 7.2167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G19ABgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.8e-106893126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++rt +C yG+ C+F+H 
  Araip.G19AB 68 PGEADCIYYLRTRFCGYGSHCRFNHL 93
                 57899********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4796795IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-76993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-67096IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-47392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MKRSLRIRME ICGVSESSDF LVSAKWSCTG DLENVGYCEV CVILILKNTE AVWQIRLGAT  60
EEFYPQRPGE ADCIYYLRTR FCGYGSHCRF NHLRDRVEIR FHCVRPMDRY SRLSEGSQSD  120
PASVVAVGAV ARAGGWEYLE PIGQPLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G19AB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020998009.17e-33zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A444YR437e-66A0A444YR43_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1922834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.15e-15zinc finger protein 1