PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.G4K6Y

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 469aa MW: 53593.1 Da PI: 8.2707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.G4K6Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.8	1.7e-13	51	129	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ ++ei+++ +C++egk +++ + +++t+++ +C a++ ++ ++++l+H+H+++p Araip.G4K6Y 51 KFYRNYAKAAGFSTRVRSTNKK--ENEIKNQLITCNREGKWKSKISP---TEKTNPTADLNCPARIYIHTL-------KDVVLDHSHPCCP 129 6**************98887..7779*********998877...8999************987.......7888999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-11	51	129	IPR004330	FAR1 DNA binding domain
SMART	SM00575	0.006	267	294	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVPESFSV VDDQFVPKVG MTFTTLEDVG KFYRNYAKAA 60 GFSTRVRSTN KKENEIKNQL ITCNREGKWK SKISPTEKTN PTADLNCPAR IYIHTLKDVV 120 LDHSHPCCPS KAEMLKQHRE LSMSIHRTIE NNEEANHHFW AGTRSTQRNE GMHSFFNKFI 180 TRNSSLIQFV KQYDNCLGSR EQAERESDAA DFHMFREVQA QFRGKANCIT RLTNSALGHS 240 VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFESRGIL YRHALSVLSF EQVSQVSPRY 300 ILERWSKKVK RRHTHIKSSH DEPLLEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY 360 DNVMDEMESL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLDKQIANA 420 TKEKKTKVLS EINLFDAASV VHSNSSQYQG HVMNYQFRVP AAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MDDSTSDCQL NPGEVDYEFE SNEVPESFSV VDDQFVPKVG MTFTTLEDVG KFYRNYAKAA  60
GFSTRVRSTN KKENEIKNQL ITCNREGKWK SKISPTEKTN PTADLNCPAR IYIHTLKDVV  120
LDHSHPCCPS KAEMLKQHRE LSMSIHRTIE NNEEANHHFW AGTRSTQRNE GMHSFFNKFI  180
TRNSSLIQFV KQYDNCLGSR EQAERESDAA DFHMFREVQA QFRGKANCIT RLTNSALGHS  240
VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFESRGIL YRHALSVLSF EQVSQVSPRY  300
ILERWSKKVK RRHTHIKSSH DEPLLEPRSK RFDQLVFRSQ NICEFASESE ELTAILHRAY  360
DNVMDEMESL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLDKQIANA  420
TKEKKTKVLS EINLFDAASV VHSNSSQYQG HVMNYQFRVP AAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.G4K6Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-21	far-red elongated hypocotyls 3