PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G7YH4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 420aa    MW: 50455.9 Da    PI: 5.4326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G7YH4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-1240128197
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkvl    ++k+  l +pk+f++e+  g++ +   ++l+ ++  + +v+  +rk+ ++++l++GW++ vk+ gL+   f++F ++g s+f   vk++
  Araip.G7YH4  40 FFKVL--VQSFKHE-LKIPKPFVKEYwRGVS-N--PIVLKLPNTLKQRVYW-IRKNEDEIWLEEGWEQVVKDFGLEYSQFLTFDYKGWSCF--EVKIY 128
                  78888..5566665.99*********95562.3..4999999999999999.5999999**************************987999..67666 PP
2B351.91.4e-16330416695
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    s+v++++ + +p +fa++h   +e+++ +++ +   r W+v ++ ++++ r   + l++GW +F ++n+L++gD++vF+l+++  +++ v+
  Araip.G7YH4 330 QESYVGSRC-VAIPATFARKHL--EEGPIRMIVGN---RAWTVCYKTWRGRARyrkHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMIVR 416
                  356777777.***********5..34665666555...99999998877777667799***********************998744445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.86837131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-1338130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-940129No hitNo description
SuperFamilySSF1019362.16E-1540137IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1240131IPR003340B3 DNA binding domain
PfamPF023627.7E-1040129IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-9140233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-9142233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.724142234IPR003340B3 DNA binding domain
SMARTSM010190.042144234IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.109.5E-4235310No hitNo description
Gene3DG3DSA:2.40.330.102.6E-16319408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17320418IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-14323417No hitNo description
PROSITE profilePS5086310.489324420IPR003340B3 DNA binding domain
SMARTSM010196.4E-9325418IPR003340B3 DNA binding domain
PfamPF023627.2E-14326417IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
KDERKLKQRE KKIWIFFFFF NLASFTSSFL LTMPLHERGF FKVLVQSFKH ELKIPKPFVK  60
EYWRGVSNPI VLKLPNTLKQ RVYWIRKNED EIWLEEGWEQ VVKDFGLEYS QFLTFDYKGW  120
SCFEVKIYPK NDSEIMPPHH QICFFQILVH NKFYQKLRVP KCANECWKRM SNPIKLVLPY  180
GVERKVNWTK RGEKIWLEQG WEKVVELCGL SHQWLLTFDY NGMSRFEVKV YDNTTLRVAY  240
YDEYDVENNK DVDETESEDD DDDDDDDDND DDDDDEDEDD DDDDGDDGDF AEDYCDEEYH  300
YKFVQEHFKR KKTNTVNGSN RNPSFKIRIQ ESYVGSRCVA IPATFARKHL EEGPIRMIVG  360
NRAWTVCYKT WRGRARYRKH KLQSGWLRFR RENNLEVGDV CVFELISKFP QTMIVRVQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G7YH4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179369.20.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_025682760.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A444XAN40.0A0A444XAN4_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-11related to vernalization1 1