PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GNW0G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 339aa    MW: 39411.1 Da    PI: 10.1615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GNW0GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-14451241398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++  +p+kf +++gg+ +++  ++l+ ++g +W++    ++++g++++++GWkeF+    L+ g ++ F+++g+s+   ++ +f+
  Araip.GNW0G  45 LALQKIPNKFSRKYGGDMPNP--VKLQPPDGTEWRIDW--TNRDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNI--KINIFD 124
                  55668*********9998777..***************..*******************************9986555..677765 PP
2B343.27e-142593371799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   lp  f++ + ++++e           ++W  +liy  +++  +++ +W+ Fv++n+Lk+gD+++F+l++r++  l+v+++r+
  Araip.GNW0G 259 NLPVCFFRMYFENTKEY---ATLRVGKKQWHATLIYYPNRKNALIS-NWRLFVEENNLKAGDVCIFELINRQGPDLKVHIRRS 337
                  57777888886554443...3334567*********9998777666.**********************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.83E-918124No hitNo description
SuperFamilySSF1019369.81E-1832126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1833126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.67433126IPR003340B3 DNA binding domain
SMARTSM010196.0E-934126IPR003340B3 DNA binding domain
PfamPF023622.0E-1144124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-19236337IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-12237336No hitNo description
SuperFamilySSF1019361.24E-16237337IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-8244338IPR003340B3 DNA binding domain
PfamPF023621.3E-11260337IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56283338IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSSNFQRNK NSLSTLIRFF KIVLRKSLDD GYLFCQVWLP TTVSLALQKI PNKFSRKYGG  60
DMPNPVKLQP PDGTEWRIDW TNRDGEILFE NGWKEFATFY TLENGHVLWF EYNGTSNIKI  120
NIFDMSALEI DYPSNGRIRD DNSVEILDEP PPRRGRGRPK KKVIAEPKQS RASTTTSKIM  180
KSAIKTKDID KNPNTQNLKL HVENEKDGQS EETGDLKLPI IQRARPDMDV IREAKKFKSK  240
NPSFVIKIKQ MHQTGSPANL PVCFFRMYFE NTKEYATLRV GKKQWHATLI YYPNRKNALI  300
SNWRLFVEEN NLKAGDVCIF ELINRQGPDL KVHIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.GNW0G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178706.20.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A444XAP10.0A0A444XAP1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-27B3 family protein