PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.GZM57

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 187aa MW: 21569.1 Da PI: 6.5115

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.GZM57	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.4e-19	88	177	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+v F +r+++++ k+++ +++ + Cs+eg+re++ k+ + r + t Cka++ v +++ +++w+v+klel+H+H++ Araip.GZM57 88 EFYSNYAKKVDFVTRIRNTNFDktrKDSKIPINQSLHCSREGYRESRVKA---ATRVKRITTARCKARMYVMLDRqKDNWMVSKLELKHTHPC 177 6***********9998876645455666799**********999...7888889999*****9998*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-16	88	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MDQAISEEAS YDTAYDDSDQ YNSCDVNVPS LSEDDTQHVD KGKESVNVIQ VEDDAMTVNP 60 ELPDHTGIPI DEIPYVGLRF VSLQRAQEFY SNYAKKVDFV TRIRNTNFDK TRKDSKIPIN 120 QSLHCSREGY RESRVKAATR VKRITTARCK ARMYVMLDRQ KDNWMVSKLE LKHTHPCSAK 180 QAVHYTE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.GZM57

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164185.1	1e-139	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025664390.1	1e-139	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YDG0	1e-138	A0A444YDG0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-13	FAR1 family protein