PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H0CEM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 459aa    MW: 52651.9 Da    PI: 9.2775
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H0CEMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83.2e-1767153191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++      +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.H0CEM  67 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKIFP---TEKTNPTVGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 153
                  6***************998776..8889**************99877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1467153IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.087246282IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-4248279IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-4257284IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEVYYI RHDWFLTRCI VQPLSVVDDE LVPKVGMTFT  60
TLEDARKFYR NYAKAAGFST RVRCTNRKGN EIKNQLITCS REGKWKSKIF PTEKTNPTVG  120
LNCPARIYIH TLKDVGAWII SKVVLDHSHP CCPSKAEMLK QHRELSMSIR RTIENNEEAG  180
IRPSKTYQSF VAAAGGHHRH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIH  240
SIFNKFVVTY DSVAAEVKCH CLLFESRGIL CRHALSVLSF EQVSQVSPRY ILERWSKKVK  300
RRHTHIMSSH DEPLMEPRSK RFDQLVFRSQ NICEFASESD ELTAILHRVY DNVMAEMESL  360
KAKRKGTSSL SHEDANLESV NELQSPPRIQ TRGRPKNRLG SKLEKQIANA TEKKKTKVLS  420
EINLFDAASA VHSNSSQYQG HVMNYQFKVP AAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H0CEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960283.11e-161protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445A6A20.0A0A445A6A2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-14far-red elongated hypocotyls 3