PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.H0PL5

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 265aa MW: 29414.4 Da PI: 9.5151

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.H0PL5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.2e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k ++k++l+H+H+++p Araip.H0PL5 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVVISIISKVVLDHSHPCCP 137 6*************998776..8889*********998877...8999**********9998566677899******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-13	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDHSTSDSQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVV 120 ISIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRCTIENN EEVGIKPSKT YQSFVAAAGD 180 ANLESVNELQ SPPRIRTRGR PKNRLGSKLE KQIANATKKK KTKVLSEINL FDAASMAHSN 240 SSQYQGHVMN YQFRVPAAGD NSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.H0PL5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997160.1	1e-121	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444X783	1e-121	A0A444X783_ARAHY; Uncharacterized protein
TrEMBL	A0A444Y683	1e-122	A0A444Y683_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-06	FAR1-related sequence 10