PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H1YW5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 108aa    MW: 12303 Da    PI: 7.1869
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H1YW5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.32.9e-0962103144
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 
                  kfY++YAk +GFs+r++ ++++   +ei+k+  +Cs+egk +++
  Araip.H1YW5  62 KFYRNYAKAAGFSTRVRCTNRK--GNEIKKQLITCSREGKWKSK 103
                  6***************998776..8889***********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-662103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKSKFELVLK IMDHSTSDCQ LNPGEVDYEF ESNEVPEPFS VVDDELVPKV GMTFTTLEDA  60
GKFYRNYAKA AGFSTRVRCT NRKGNEIKKQ LITCSREGKW KSKISPTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H1YW5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-73HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.12e-66protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0M45e-67A0A444X0M4_ARAHY; Uncharacterized protein
TrEMBLA0A445C8R33e-64A0A445C8R3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.17e-07FAR1-related sequence 10