PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.H5HN3

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 470aa MW: 53782.9 Da PI: 7.7635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.H5HN3	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5.2e-18	72	161	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY +YAk+vGF +++++++ k+++ +++ +C++eg+re++ ++ + r + t + C+a++ v ++k ++ w+v++lel H+H++ Araip.H5HN3 72 KFYANYAKKVGFVTKIRNTNFDktrKESKIPVNQSIYCTREGYRESRVNA---ATRANRITAMRCRARMYVVLDKeKESWVVSRLELRHSHPC 161 6*********99998887664445566668999*******9988...889999*********99999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-15	72	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	370	406	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.004	381	408	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MAFSNPKGGS ISTLINPTQG DEQFSGDEIT NVVVNRKDEL DDRHELPDHS GVCEEKILVI 60 GMSFGSLPVA QKFYANYAKK VGFVTKIRNT NFDKTRKESK IPVNQSIYCT REGYRESRVN 120 AATRANRITA MRCRARMYVV LDKEKESWVV SRLELRHSHP CSAKKVVHYH EYRDLTMHAK 180 CVITDNDEAG IRPNKTYLAL ANEVCIGDLY ANRRKWVPIF FKSEFWAGMR STQRSESMHA 240 FYGGYLHCKS GLVQFVHEYD NVLGNKEQKE LEDDAADSEG VIPYLYANRR KWVPIFFKSE 300 FWAGMRSTQR SESMHAFYGG YLHCKSGLVQ FVHEYDNVLG TKEQKELEDD AADSKGVIPC 360 IGSTGIERQF QVEFDPLSRK GQCECNKFES AGILCCHTLA VWSYYRVDTV PSCNVLPRWS 420 KNVICKHTYI KSSHDVARSD ESNNLFRHLC SEFYNVAQEF VACDEKAAVL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MAFSNPKGGS ISTLINPTQG DEQFSGDEIT NVVVNRKDEL DDRHELPDHS GVCEEKILVI  60
GMSFGSLPVA QKFYANYAKK VGFVTKIRNT NFDKTRKESK IPVNQSIYCT REGYRESRVN  120
AATRANRITA MRCRARMYVV LDKEKESWVV SRLELRHSHP CSAKKVVHYH EYRDLTMHAK  180
CVITDNDEAG IRPNKTYLAL ANEVCIGDLY ANRRKWVPIF FKSEFWAGMR STQRSESMHA  240
FYGGYLHCKS GLVQFVHEYD NVLGNKEQKE LEDDAADSEG VIPYLYANRR KWVPIFFKSE  300
FWAGMRSTQR SESMHAFYGG YLHCKSGLVQ FVHEYDNVLG TKEQKELEDD AADSKGVIPC  360
IGSTGIERQF QVEFDPLSRK GQCECNKFES AGILCCHTLA VWSYYRVDTV PSCNVLPRWS  420
KNVICKHTYI KSSHDVARSD ESNNLFRHLC SEFYNVAQEF VACDEKAAVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.H5HN3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025703073.1	1e-174	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X717	1e-176	A0A444X717_ARAHY; Uncharacterized protein
TrEMBL	A0A445B6E8	1e-176	A0A445B6E8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-19	FAR1-related sequence 5