PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H60UK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 206aa    MW: 23640.8 Da    PI: 5.8375
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H60UKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.88.2e-14131200170
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 
                  +fY+ ++k  GF +rk    k  ++g+ +kr+f C++ g re+++ +  +++r++++etrt+C+akl + +
  Araip.H60UK 131 EFYRVFGKFHGFGIRKGDCGKD-DDGRLIKRRFFCNRAGLREHKHYNrVDRRREHKPETRTNCDAKLSIYL 200
                  6*****************9998.8899****************99995566777899**********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-11131199IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVMKDFCFFS NSEFTRIPLL SIATTFLPLP SIDQRLPSLA AHVTVEHAAY LAWSPLQSLA  60
SAHLTITHLY GCIIYMEALS ADCTTDVNNE FEWSLEDEID DVEGLEYGDI LGLTAGDIMR  120
MVFRSDDGAY EFYRVFGKFH GFGIRKGDCG KDDDGRLIKR RFFCNRAGLR EHKHYNRVDR  180
RREHKPETRT NCDAKLSIYL DININV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H60UK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963324.17e-93putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_025668177.26e-91protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15343210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-07FAR1-related sequence 10