PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H7YL9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20536.2 Da    PI: 9.546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H7YL9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.1e-201559246
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 ri+n++ rqv fskRrng+lKK +EL +LCd+ev v+ifsst+ +
  Araip.H7YL9 15 RINNSTSRQVKFSKRRNGLLKKVKELAILCDVEVGVMIFSSTNSM 59
                 8*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-28665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.478659IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21763IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-19828IPR002100Transcription factor, MADS-box
PfamPF003194.3E-201559IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNRNATRRGK IAIRRINNST SRQVKFSKRR NGLLKKVKEL AILCDVEVGV MIFSSTNSMI  60
SPVPAAQESE KGKGWKRFEF DKDAPLEDEE IEVAEDDASL VKQIGQSFRY SKIEARRKEQ  120
IQAAHDEAMF GASALPPPTS TDNEPEQENE KEVDKKAVVT SLLSETVLAK RKGSWRDRVQ  180
ES
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H7YL9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371778e-61HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206709.11e-107agamous-like MADS-box protein AGL16
TrEMBLA0A444ZX771e-130A0A444ZX77_ARAHY; Uncharacterized protein
STRINGGLYMA05G01740.11e-60(Glycine max)
STRINGGLYMA17G10150.11e-60(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.23e-25AGAMOUS-like 16