PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HA1N2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 268aa    MW: 30863.9 Da    PI: 5.8699
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HA1N2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.36e-19155246191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY++YA+   F  r +++ +   ng+  +r++vC++eg+r+++  + +++++ +++ tr+ C+ak++ + +   +kw+vtk+e+ HnH+l p
  Araip.HA1N2 155 DFYRNYARVHDFVARLDEKGQD-FNGNLNMRQMVCNREGTRRKKYLEmENRKKDHKPITRVMCQAKIRFHYDLiLQKWRVTKFEETHNHDLIP 246
                  6************999987776.9999***************999885677778999***************99****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-16155246IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
TGVRLSPSHH PSLASVTTIT APPLSASNSS VAAVSHVLSL RDSCVRCLRS TSVAAFSITT  60
PLTLVIFCQN FIINMNIDDN KNLEVSIECD ELCFGYDSSS DKEEEDLINN EGKFSESMEV  120
SNCSYKIQEV EKKLNELSYD DMWGIEFDTV DQCCDFYRNY ARVHDFVARL DEKGQDFNGN  180
LNMRQMVCNR EGTRRKKYLE MENRKKDHKP ITRVMCQAKI RFHYDLILQK WRVTKFEETH  240
NHDLIPPKYI QFVPAYRTMT DADKAQAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HA1N2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164686.11e-145protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445CDV21e-143A0A445CDV2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2354823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-16FAR1-related sequence 11