PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HA94C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 213aa    MW: 24465 Da    PI: 7.6574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HA94CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000264786454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++ e ErrRR+++ +++  Lr+l+            Ka+i e A+ YIk+L
  Araip.HA94C 47 KNLETERRRRQKLSDRLLMLRSLMN-----------KATIIEDAITYIKNL 86
                 56689****************9975...........559**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-845103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1145102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-84590No hitNo description
SMARTSM003539.5E-54992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGNLYDNRLT VSVDELYFNA ENSSINKRGR MGRRNYDADD TVVYKSKNLE TERRRRQKLS  60
DRLLMLRSLM NKATIIEDAI TYIKNLKDKV DSLTRELQEI EATSETTLVE PKTNETNNGE  120
AMKEWGIKEE VRVTNIDGKK LWLKLIIEKK KGRFTQLMDA IHSFGIELID TNVTTMKGAL  180
LITASIQGMD GEALVVQQTK ELMLDIINST HTY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HA94C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029146974.11e-153transcription factor DYT1
TrEMBLA0A445DRK01e-132A0A445DRK0_ARAHY; Uncharacterized protein
STRINGXP_007148286.18e-73(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.17e-25bHLH family protein