PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HB5N9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 596aa    MW: 66650.2 Da    PI: 9.0358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HB5N9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.89.5e-151184188
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                 +fYneYA+++GF+ + s +++sk +g    r+fvC   g +++ +++              C+a+++++++ ++kw vtk+++eH+H+
  Araip.HB5N9 11 NFYNEYARRLGFTPKASPQSRSKPDGANAYREFVCGGDGLKRKPNET--------------CNAMIRIERKGQHKWFVTKFVKEHSHS 84
                 6**************************************99998777..............**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-111185IPR004330FAR1 DNA binding domain
PfamPF044341.3E-10265299IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.041265301IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-8276303IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MGFESEDAAK NFYNEYARRL GFTPKASPQS RSKPDGANAY REFVCGGDGL KRKPNETCNA  60
MIRIERKGQH KWFVTKFVKE HSHSTSSSGE VHSLQPRRHF SSVGRTMPET YQGVGLVPSG  120
VMYISMDRAP GNRNSTENIH GSRNFPAVGA KTNHQVSAVA TKTNHQVPAV AAKTNHQVPA  180
VYEQAMEMWF EREIELDSET ICSQPVLKTP SPMEKQTANL YTRKVFSKFQ EELVETFVYT  240
ANRIEEEGAN SIFRVAKFED DQKAYIVTLN HSELKADCSC QMFEYSGILC RHVLTVFTVT  300
NVLTLPSHYI LKRWTRNAKS YVGLDEHASE SHGLDSMTSR YGTLCREAIK YAEDGAISVE  360
TYSAAMGALR DVGKKVAVAK RNFAKVAPAS SRSISNAHDD KKNQTSRSDT PPLLWPRHDE  420
TTRRFNLNDA GAPVQQSFGD LNFPRMAPVS VQRDDGQDEN MVVLPCMKSM TWVMENRSST  480
PGNKVAVINL KLQDYTKVPS AETEVKFQLS RVSLEPMLKS MAGISEQLST PANKVAVINL  540
KLQDSDTISG ESEVKFQVSR DTLGAMQRSM SYIREQLSSD GYVQSDPISV TKRQKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HB5N9
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166102.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_025667429.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2P5WSL30.0A0A2P5WSL3_GOSBA; Uncharacterized protein
STRINGXP_009365699.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]