PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HF6QK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 352aa    MW: 41670.7 Da    PI: 9.985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HF6QKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-12301091294
                  HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +++ l +p +f+e++  g+    s  + le ++g + e+k i++k+ ++++l +GW++ v+  gLk   fv+Fk++g+s+fel v
  Araip.HF6QK  30 SLHELEIPPSFVEKNwkGL----SNPILLELPTGHRIEIKWIMKKN-NSVWLNEGWRRVVELLGLKHEYFVTFKYNGKSKFELIV 109
                  457899*********7544....4459**************75555.689***************************9*999876 PP
2B331.53.2e-10261347498
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    t s   +  r+++p++f+ +++     +k++t++    +sW vk+   +++ +  + kGW +F+++ +L +gD++ F+l++ ++f ++v++ +
  Araip.HF6QK 261 LITESKLKTPTRVRIPRSFICRNERC--VGKDVTFKV-GKESWIVKV--LNSG-S--FCKGWIQFARECKLVVGDICYFELTDPTNFVFHVSISK 347
                  444555556699*******9899644..345788776.679******..6665.3..679********************998899988888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-136113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-77110No hitNo description
SMARTSM010195.5E-48113IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-1528120IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-1030109IPR003340B3 DNA binding domain
PROSITE profilePS508638.96634113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-12163245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13167245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-7169245No hitNo description
PROSITE profilePS508637.204170244IPR003340B3 DNA binding domain
SMARTSM010190.46171255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-14251347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14254346IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0041258349IPR003340B3 DNA binding domain
PROSITE profilePS5086310.066258349IPR003340B3 DNA binding domain
CDDcd100172.89E-9258347No hitNo description
PfamPF023621.4E-7262346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAFYNNMFFK VLIDPNQLRK NQPKWKKPSS LHELEIPPSF VEKNWKGLSN PILLELPTGH  60
RIEIKWIMKK NNSVWLNEGW RRVVELLGLK HEYFVTFKYN GKSKFELIVF HPNTLEIDYS  120
NVRNFYNDDH HQGTSKSMLK KVRRNMKCGD HRRKALERAE AISSKLKNPS FVRDLRRSYV  180
DYGILQIPSS FSEQYLYRLK GSGTIWVSDN EDMKWSIKYS YNDSQNRTSI YGEWHKFREE  240
NGLEVESESP NRQTNNQFEL LITESKLKTP TRVRIPRSFI CRNERCVGKD VTFKVGKESW  300
IVKVLNSGSF CKGWIQFARE CKLVVGDICY FELTDPTNFV FHVSISKEEH RS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HF6QK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025624954.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A445B0U81e-177A0A445B0U8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein