PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HI284
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 515aa    MW: 59068.9 Da    PI: 8.4696
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HI284genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.53.4e-1651137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei ++  +Cs+e k +++ +     ++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.HI284  51 KFYRNYAKATGFSTRVRSTNRK--GNEIENQLITCSREEKWKSKISP---IEKTNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..8889***********99998776...999***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1351137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.877300336IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDDSTSDCQL NQDEVDFEFE SNEVPEPLSV VDDQFVSKVG MTFTTLEGAG KFYRNYAKAT  60
GFSTRVRSTN RKGNEIENQL ITCSREEKWK SKISPIEKTN LTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSICRTIENN EEADLYEDRH IWVPIYLDHH  180
SWAEMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREHAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA YCITRLTNSA LGYSVYKVGE QVFSSIFNKF  300
VVTYDSVAAE VKCQCLLFES RGILCHHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLE PRSKRFDQLV FCSQNICEFA SESEELTAIL HHAYDNVMVE MESLKAKRKG  420
TYSLSHEDAN LKSVNELQSP PRIRTRGCPK NRLGSKLDKQ IANATKKKKT KALNEIKLNF  480
FDTASMVHSN SSQYQGRVMN YQFRVPAAAD NSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HI284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444ZZ110.0A0A444ZZ11_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-32far-red elongated hypocotyls 3