PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HIJ9F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 418aa    MW: 47125 Da    PI: 9.932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HIJ9FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.16.8e-53852211128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++   
  Araip.HIJ9F  85 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSpaa 181
                  79****************************.89***************988899***************************************99888 PP

          NAM  96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ vg+kk Lvfykgr pkg+kt+W+mheyrl
  Araip.HIJ9F 182 tvtrrvgQESSVGVKKALVFYKGRPPKGVKTNWIMHEYRL 221
                  88887776677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6375233IPR003441NAC domain
PROSITE profilePS5100554.32785244IPR003441NAC domain
PfamPF023651.5E-2786221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPPSPLGLIS FSTWRQIPST IKSPSLLTSP KISILSSSLF LDFSLLHQTS LSLLLFLLFL  60
TKPITNILLH QIIRLSKMGS PESNLPPGFR FHPTDEELIL HYLRKKVASI PLPVSIIAEV  120
DIYKLDPWEL PAKAAFGEKE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKTIVVSPA  180
ATVTRRVGQE SSVGVKKALV FYKGRPPKGV KTNWIMHEYR LLDDWVLCRI YKKSKFSVSS  240
PEESPSSEVQ AAEENGLFKN TILKSPIPTL SPSPPPPLPP QPLLSQKSVS FSNLLDAMDY  300
SMLSTILSEN NNNSTLDQEQ YSQINTNQLN HSSNMENTSN SNMMLMRSKR QIDEETTTVL  360
HPSKKFHHQL MGSSSCSFPN NINNTNTAQY ENPQWNYLVK QSFLNQHLLL APHLRFQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-69762332165NO APICAL MERISTEM PROTEIN
1ut4_B4e-69762332165NO APICAL MERISTEM PROTEIN
1ut7_A4e-69762332165NO APICAL MERISTEM PROTEIN
1ut7_B4e-69762332165NO APICAL MERISTEM PROTEIN
4dul_A4e-69762332165NAC domain-containing protein 19
4dul_B4e-69762332165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HIJ9F
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7118304e-92KF711830.1 Ammopiptanthus mongolicus transcriptional factor NAC11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025658519.10.0NAC domain-containing protein 1
SwissprotQ84TD65e-96NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A444YRM60.0A0A444YRM6_ARAHY; Uncharacterized protein
STRINGGLYMA19G28476.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-89NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]