PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HL5TY
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 146aa    MW: 16641.9 Da    PI: 6.4834
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HL5TYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.91.4e-3751051101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk +rrkC++dC+++p+fpa++p+kfa+vhk++G snv k+l+ +p+  re+a+++l+ eA++r++dPvyG+vg+i++l +q+++++ ela+++
  Araip.HL5TY   5 RCAACKNQRRKCPSDCIFSPCFPANDPQKFACVHKIYGGSNVGKMLQGIPTYLREQAANALYLEAKWRIHDPVYGCVGIISSLYEQIQNAEIELAKIQ 102
                  6***********************************************************************************************99 PP

       DUF260  99 eel 101
                  +++
  Araip.HL5TY 103 TQI 105
                  885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1314105IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-375102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MISERCAACK NQRRKCPSDC IFSPCFPAND PQKFACVHKI YGGSNVGKML QGIPTYLREQ  60
AANALYLEAK WRIHDPVYGC VGIISSLYEQ IQNAEIELAK IQTQITFYKL QTQRVEAEPN  120
SEVLQAQSSN MEQFEWDNPT IASWFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-31610812114LOB family transfactor Ramosa2.1
5ly0_B2e-31610812114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HL5TY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1798943e-35CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166461.11e-107LOB domain-containing protein 24-like
SwissprotP594672e-42LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594682e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A445C3E91e-100A0A445C3E9_ARAHY; Uncharacterized protein
STRINGAET005259e-68(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-45LOB domain-containing protein 24