PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HSH1H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 544aa    MW: 61907 Da    PI: 8.7983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HSH1HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.6e-17169258391
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  Y eYA+ +GF vrk  s +  ++g+++++ f C++eg r++++ +  +++r +++ trt+ +a++ v+++k  gk ++++++ +HnHelap
  Araip.HSH1H 169 YVEYARVTGFAVRKGDSGRD-NEGNVVRKFFFCNREGLRDKKHYErIDRQRAHKPITRTNSNARFLVHLDKgCGKLNMKSFVVDHNHELAP 258
                  99**************9998.8888**************999988567888899*****************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-15169258IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.484380416IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-4391418IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNTEVLHELG FPGCGKTDHY RKHWHTHCQR SATRSGKVGI QWKTAVEFAG RYWRTICCWY  60
SWSKKIDVGG RVTATGENRA TYDLSTGSEA DECETARLES GQLEEVDMTR LDTEESSRVA  120
DDAKDQGSSS ATVRSVEEPN SSNRCEAGVT TEDLAIAEFD SVEEAYVRYV EYARVTGFAV  180
RKGDSGRDNE GNVVRKFFFC NREGLRDKKH YERIDRQRAH KPITRTNSNA RFLVHLDKGC  240
GKLNMKSFVV DHNHELAPAD HTNVMAPHRH ICEGINSSLK KFIRSGNCLL ELVENLDRVV  300
KDYQNNEFMA DFKCLYSEPV MTTGLESIEK AVSKVYTREI FFEVKKQIES VAALLVLHHE  360
TYGTIQKFML RKFRRPLRVY TILYNSSSKN YECSCKLWNS LGVPCSHIFC AMKELEIEAL  420
PRRLVLRRSC KDAKTLEKVG AVPMADPEKA FRERYGSMWS ASGPRGGRNR FRRAGDDHVN  480
MLDPTIVKSK GAPRGSTNAK IGRRCRRCNG LGHDRRNCTA RNEQPDDEVV GTMNGQYQTS  540
CKRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HSH1H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025670470.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y1D50.0A0A444Y1D5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1663528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-13FAR1-related sequence 5