PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.HTA9A

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 457aa MW: 51960.2 Da PI: 7.9385

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.HTA9A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.6e-22	69	158	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y +YA+++GF vrk+ ++ ++ + +r +vC+++g+r++++ + +++r++++etr+gCka+ v ++k + kw+v++le+eHnH++ Araip.HTA9A 69 AYIKYARDMGFVVRKRDLSRD-EDVNLNRRYYVCNCQGTRDPKHYRlVDRKRNHKPETRIGCKAHCSVYLDKlSMKWRVKTLEEEHNHPMI 158 599************9998.77779***********9999788899999*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	69	159	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50811	8.719	84	158	IPR003657	WRKY domain
PROSITE profile	PS50158	9.208	329	342	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDEFSSGDQA PEWTSSSSDD SIYYEDEDSH QGVENTDNIE SSIEKDDDKV TTTMLWSSEF 60 DEEVHAYKAY IKYARDMGFV VRKRDLSRDE DVNLNRRYYV CNCQGTRDPK HYRLVDRKRN 120 HKPETRIGCK AHCSVYLDKL SMKWRVKTLE EEHNHPMIPE QFVHLISSYR KLTEADKVRI 180 VCMKEPGFQT SQIVGVLAKL AERVVKEYRN NEFVAQFKSM YSKPVLTTGL DSIEQAAARV 240 YTTEVFVEVK DQLAKVAALK HVGKSGMGSN VVHCVANLDD QRWRKDAKAY LNEEVDDGKD 300 PKRAFSLRVC SPGAPKLNKK FKGLKTRNCS RCGKTGHTRR TCHNVESKKQ CSTGDNGSEG 360 QGHGSRFETG RHNSHDDDVV AKQGSLSSKF GLYSTEEQHI NQVHAMNAMP SSSTSPIAKV 420 MPFANAMYSN AGTDVFSFVP SHQWHFQDMM PHARNNL

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDEFSSGDQA PEWTSSSSDD SIYYEDEDSH QGVENTDNIE SSIEKDDDKV TTTMLWSSEF  60
DEEVHAYKAY IKYARDMGFV VRKRDLSRDE DVNLNRRYYV CNCQGTRDPK HYRLVDRKRN  120
HKPETRIGCK AHCSVYLDKL SMKWRVKTLE EEHNHPMIPE QFVHLISSYR KLTEADKVRI  180
VCMKEPGFQT SQIVGVLAKL AERVVKEYRN NEFVAQFKSM YSKPVLTTGL DSIEQAAARV  240
YTTEVFVEVK DQLAKVAALK HVGKSGMGSN VVHCVANLDD QRWRKDAKAY LNEEVDDGKD  300
PKRAFSLRVC SPGAPKLNKK FKGLKTRNCS RCGKTGHTRR TCHNVESKKQ CSTGDNGSEG  360
QGHGSRFETG RHNSHDDDVV AKQGSLSSKF GLYSTEEQHI NQVHAMNAMP SSSTSPIAKV  420
MPFANAMYSN AGTDVFSFVP SHQWHFQDMM PHARNNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.HTA9A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445DK06	0.0	A0A445DK06_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16635	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-14	FAR1-related sequence 10