PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HU43I
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 523aa    MW: 60055.2 Da    PI: 9.332
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HU43IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.67.3e-1761147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.HU43I  61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147
                  6***************998776..8889************9998777...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1461147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186310346IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4312343IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4321348IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDHSTSDSQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSRERKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EILKQHRELS MSIRRTIENN EEADLYEDRH  180
IWVPIYLDHH FWAGMRSTQR SKSMHSFFNK YITRNNSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIPC ATKSSIEAQF QEAYTHAKFR EVQAQFRGKV NCITRLKNSA LCYSVYEVKE  300
QVSSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS  360
KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE  420
MEALKAKRKG TSSLSHEDTN LESVNELQSP PRIRTRGRLK NRLGSKLEKQ IANATKKKKT  480
KVLSEIKLFD TASAAHSNSS QYQGHVMNYQ FRVPAARDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HU43I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.29e-37far-red elongated hypocotyls 3