PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HWR4Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 554aa    MW: 61700.1 Da    PI: 8.394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HWR4ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12388434455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I++Lq
  Araip.HWR4Z 388 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHINELQ 434
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-2535161IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-8163201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-18387450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-14387438No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17388450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-16390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVMKILGKRA FDYLASNSFI TNESMLMATG SFENLQNKLS DLVERPNLNH FSWNYAIFWQ  60
FSQSKFKKDC VVLGWGDGCC REPIEGEEER EALRLGFDDD EVVQRMRKRV LQKLHTIFNG  120
SEEENENYAF GLDRVTDTEM FFLASMYFSF PKGYGGPGKC FELAGIKTVV LVPTELGVVE  180
LGSVRIVDEN LDLLKAVYSV FSSSFAHSSS FNDVGVPVPK IFGKELNVGN LNSGGKNFRE  240
KVVVRKIEEK KSWNGYPNGN NGIRFPNNAR NGVNGSSWAV NQGLSQGCLG GVFPPIPRSC  300
LSNMAKQADC GGKKDSLLEK FQRPPQGQVP MQIDFGVGSQ SFGRSIVGEC EISNSDSLHK  360
EEKPSATQEK RPKKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  420
SLLGDAIAHI NELQAKLKAL EYEKSTLKST SKANLSGIEA NLRDRTCSFK VDIEADQDGV  480
IVKVSCPIEL HPTSKLIQAL KDSEMSILES TFNATNDHVF HTFVIKSHAS EQLTKEKVIA  540
AISGESNSRK LIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29382449269Transcription factor MYC2
5gnj_B2e-29382449269Transcription factor MYC2
5gnj_E2e-29382449269Transcription factor MYC2
5gnj_F2e-29382449269Transcription factor MYC2
5gnj_G2e-29382449269Transcription factor MYC2
5gnj_I2e-29382449269Transcription factor MYC2
5gnj_M2e-29382449269Transcription factor MYC2
5gnj_N2e-29382449269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369377KRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HWR4Z
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181554.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-177MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A445ACC50.0A0A445ACC5_ARAHY; Uncharacterized protein
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-124bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]