PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I17XL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 258aa    MW: 30361.4 Da    PI: 9.906
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I17XLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-091842192055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Araip.I17XL 184 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 219
                  4679*****************************885 PP
2ELK38.52.4e-13139160122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Araip.I17XL 139 ELKNHLLRKYSGYLSSLKQELS 160
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.8E-1190129IPR005541KNOX2
PfamPF037912.2E-7105128IPR005541KNOX2
SMARTSM011883.5E-7139160IPR005539ELK domain
PfamPF037891.6E-10139160IPR005539ELK domain
PROSITE profilePS5121311.296139159IPR005539ELK domain
PROSITE profilePS5007113.119159222IPR001356Homeobox domain
SuperFamilySSF466894.71E-20160234IPR009057Homeodomain-like
SMARTSM003891.8E-13161226IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-28164225IPR009057Homeodomain-like
CDDcd000861.03E-11171223No hitNo description
PfamPF059206.3E-17179218IPR008422Homeobox KN domain
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
LVVKTEAIST TPHHHLQTPI LHHYPLLRGN NNNMHHPHHS QQHHHHQQGG NYNQSSNNGV  60
GEVGAPPEVV ARLVAARQEF EARQRSSVSS RESYNKDPEL DQFMELTRPI QEAMDFMRRI  120
ETQLNMLCNG PVRIFQDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK EARQKLLNWW  180
ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLHAHQKA  240
TLYMDPHYLP DPHYRLAP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I17XL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025660155.11e-151homeotic protein knotted-1 isoform X1
RefseqXP_025660156.11e-151homeotic protein knotted-1 isoform X2
SwissprotO041351e-100KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A445CXC51e-150A0A445CXC5_ARAHY; Uncharacterized protein
STRINGXP_004498934.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-82KNOTTED-like from Arabidopsis thaliana