PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I5D0R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bZIP
Protein Properties Length: 340aa    MW: 36093.6 Da    PI: 5.5161
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I5D0RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.55.9e-23258320163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN++L++el++ ++e++kl++e+
  Araip.I5D0R 258 ERELKRQKRKQSNRESARRSRLRKQAECEELQKKVESLGNENRTLREELQRVSEECEKLTAEN 320
                  89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.9E-30193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1703.3E-18253316No hitNo description
PfamPF001701.2E-19258320IPR004827Basic-leucine zipper domain
SMARTSM003381.7E-21258322IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185260323IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-11261317No hitNo description
CDDcd147021.92E-23263313No hitNo description
PROSITE patternPS000360265280IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGTGEESTAK PSKPSSTTQE IAPVPSYPDW SSSMQAYYAP GATPPPFYAS TVASAAPHPY  60
LWGGQHPLMP PYGTPVPYPA IYPPGSVYAH PSMATTPSAP QTEFVGKVPN GKDRNSAKNL  120
KGTSANNGSK AGENGKAGSG SGNDAVSQSG ESGSEGSSDD SDENANHQES ATNKKGSFDK  180
MLADGANAQN NAITQSSGKA AVSMAATNLN IGMDLWNASS AGADATKLRN NQPAPGAVNP  240
PTIMGREVAL GEQWIQDERE LKRQKRKQSN RESARRSRLR KQAECEELQK KVESLGNENR  300
TLREELQRVS EECEKLTAEN NSIKEELERL CGPEAVASLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274280RRSRLRK
2274281RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I5D0R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201827.10.0G-box-binding factor 1
RefseqXP_016201828.10.0G-box-binding factor 1
RefseqXP_016201829.10.0G-box-binding factor 1
RefseqXP_020978659.10.0G-box-binding factor 1
RefseqXP_020978660.10.0G-box-binding factor 1
RefseqXP_025653079.10.0G-box-binding factor 1-like
RefseqXP_025653080.10.0G-box-binding factor 1-like
RefseqXP_025653081.10.0G-box-binding factor 1-like
RefseqXP_025653082.10.0G-box-binding factor 1-like
RefseqXP_025653083.10.0G-box-binding factor 1-like
RefseqXP_025653084.10.0G-box-binding factor 1-like
RefseqXP_025653085.10.0G-box-binding factor 1-like
SwissprotP427741e-107GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A444Z9R60.0A0A444Z9R6_ARAHY; Uncharacterized protein
STRINGGLYMA11G06960.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-97G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]