PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I60S5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 292aa    MW: 33444.9 Da    PI: 6.623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I60S5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
      Araip.I60S5 14 KGPWSPEEDAKLKEYIHKHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.92966IPR017930Myb domain
SuperFamilySSF466894.0E-201198IPR009057Homeodomain-like
SMARTSM007174.5E-131364IPR001005SANT/Myb domain
PfamPF002491.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241569IPR009057Homeodomain-like
CDDcd001679.00E-101662No hitNo description
PROSITE profilePS500904.3566399IPR017877Myb-like domain
SMARTSM007171.767104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-970106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIH KHGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEDEDRMIC YLFASIGSRT DNDIKNYWNT KLKKKMMPIM MDPNNNNKPH  120
PQITLLSILQ NSSSTQHSPS PSSPPPFISN TTATNNNNDT YYYYHPHEPI ISYSSSSDLI  180
LNANKSYMDN NTIDHQNYHQ EPAEQVGYCG DDYYYDYGTF VDHIVANNNH NNYHYSGVED  240
AQKFMHFNGG RGNVGTEKQS STLLEENPLD NYGIDETKEL VLSNNNFLFD HN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-16141067108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I60S5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972464e-85BT097246.1 Soybean clone JCVI-FLGm-21D22 unknown mRNA.
GenBankKT0312654e-85KT031265.1 Glycine max clone HN_CCL_53 MYB/HD-like transcription factor (Glyma13g20510.1_like1) mRNA, partial cds.
GenBankKT0312664e-85KT031266.1 Glycine max clone HN_CCL_52 MYB/HD-like transcription factor (Glyma13g20510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184844.11e-163transcription factor RAX2
TrEMBLA0A445E7C51e-145A0A445E7C5_ARAHY; Uncharacterized protein
STRINGGLYMA10G06190.15e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-60myb domain protein 36