PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I7U24
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-PHD
Protein Properties Length: 1133aa    MW: 124928 Da    PI: 5.1186
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I7U24genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.25.8e-1397810231156
                   HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56  
                    +e+L + F++n+yp+++++e LA+++gLt +qV+ WF N R   +
  Araip.I7U24  978 AIERLYKSFKENQYPDRTTKESLAQETGLTLQQVSKWFDNTRWSFR 1023
                   6899**************************************8766 PP
2PHD377.8e-13573628151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C++    ++++++lCdg C++ fH+ C++++l +e++p g   wlC+ C++k
  Araip.I7U24 573 FCAKCSSkeLSTNNDIILCDGaCERGFHQLCVDPPLLTENIPPGdeGWLCPGCDCK 628
                  699999977777********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.99E-13563631IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-12570627IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.78571628IPR019787Zinc finger, PHD-finger
CDDcd155044.90E-26573625No hitNo description
SMARTSM002492.5E-9573626IPR001965Zinc finger, PHD-type
PfamPF006282.5E-10573628IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590574625IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.0E-159551019IPR009057Homeodomain-like
SMARTSM003893.7E-149631029IPR001356Homeobox domain
SuperFamilySSF466893.17E-139631027IPR009057Homeodomain-like
CDDcd000867.55E-139641026No hitNo description
PROSITE profilePS5007113.3789651025IPR001356Homeobox domain
PfamPF000461.7E-109781023IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MDQNRANQKA ETPQCWVSEW VAHTYRRNWR GGRSSHETTH TFLFLFLRLH RVEELDQRTL  60
VSLSLSSSFL PICCASGHYD VPHRHNLPFL PDYVGGCCRR GYFLGPMQGE LEEFTSPNKS  120
ASRKMQTPDA GTEQCHLSEK TSQVGSECLD NKQGVPGNVL GSSLIDDQAS EKMAKSSECL  180
DNKQSMPSDV LTSSMIDENS NRVAENSELL DDKQSMHSDV LTDSVIDEKS NQVSEKMTDG  240
TQCLGNKKNL QGEVLTNCVV DEKSNECLDN KQSVIDEVLT SHVIDEKSNQ VSDKMTESSQ  300
CLHNAQSMPS NVLTSSVIDE NSNQVSGKII RGAVIALPAQ RQRDLKKSCQ TAEGSCSQRS  360
TSEQDPSHLS NDKSEIKCQP FSQNGQNVSV EINNPVTGSL VENQTLSVPT QVNTTSANGL  420
QDPAPASVDV KNTGLNCSKR KSTATTSMQL SCKGKKSSKL LKKKYMLRSL GSSDRALRSR  480
TREKPKPPES NSNLVDANND GNLIDAYSSE GWKGYSLEKL KPEKELQRAK TEILRRKLKM  540
RDLFRYLDSL CAEGRLPESV FDSEGEIDSE DIFCAKCSSK ELSTNNDIIL CDGACERGFH  600
QLCVDPPLLT ENIPPGDEGW LCPGCDCKDD CIEIVNDSLG TRLSLEDSWE RVFPEAAAVD  660
AFNYASASEK LEDSGHEDQY MGLPSEDSED DDYNPDAPDQ DMKVAEESSS SDFTSDSEDL  720
AATINDNMPP GHGEDITSAS LDDAKKFKGS SKTSKVGKKP SITDELSSLL EADPGQESYT  780
PVSGKRNVER LDYKKLYDET YKSDTSDDDE DWNATATPTR KKNVTGKLTP VPPNRKASNN  840
STHTLRSDGK AEKTNNSAAK SLEGSGKSGS GEKKPRSSTY NRLGDVAIEE TYKSDTSDDD  900
EDWNATATPT RKKNVTGKLT PVSPNRKASN NSTHTLRSDG KAEKTNNSAA KSLEGSGKSG  960
SGEKKPRSST YNRLGDVAIE RLYKSFKENQ YPDRTTKESL AQETGLTLQQ VSKWFDNTRW  1020
SFRHSSHKEP RTGENALAQT TDNISENEVA PGGENRDSEL FPQDVTGENS KTPSSKKRKG  1080
MSEPLASESP QNADKASKTP FLHFLRVVCQ QDKTPKLWNC DLSIRIEMRL HDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462KKSSKLLKK
2533539LRRKLKM
3534540RRKLKMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I7U24
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966808.10.0homeobox protein HAZ1
RefseqXP_025677041.10.0homeobox protein HAZ1 isoform X1
RefseqXP_025677042.10.0homeobox protein HAZ1 isoform X1
TrEMBLA0A444XVC30.0A0A444XVC3_ARAHY; Uncharacterized protein
STRINGGLYMA20G26700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain