PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I8S67
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 715aa    MW: 79120.2 Da    PI: 7.3135
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I8S67genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.7e-14448486240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+C+CkkskClk+YCeCfaa+ +C+ +C+C+dC+Nk 
  Araip.I8S67 448 DCKRCKCKKSKCLKLYCECFAARDYCTGNCSCKDCCNKL 486
                  689**********************************85 PP
2TCR50.73.6e-16529568140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCk+s C+kkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Araip.I8S67 529 RHKRGCNCKQSVCIKKYCECFQAGVGCSLSCRCEGCKNTF 568
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-12447488IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.381448569IPR005172CRC domain
PfamPF036382.6E-9450485IPR005172CRC domain
SMARTSM011144.0E-17529570IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11531567IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRQNAISDHT IVLMLDQSAL LLRTFLSLLH ICTGCIFNHR YVKSNPREVE NATWMLMDSP  60
VFSFINSLSP IKPVKSAQIG QTFSSLSFPS PPRAFTSSNL TCFKESKVLR RHNPFGASRP  120
GLSSEDGNKF QTSEEAIADS FHPYHNSRES QGNFHDGISV VDDSIALPGE HTDFSAEILQ  180
ALNYNNCGNP GSDPGHEANS LEVFNQGLCQ FDPKGQESEC NWDNLISGDT DFFVFNSPND  240
AAFKGIMQKP DSHFMSLVLE SSIYNGLRDS KLKIEDYRPE PLAIIDQMQD KHCLAMTSKT  300
KEKPNVEVVS VMNCGTRRRC LDFETDSVQR KNSDDNLKSG SLGYEKQLVS AKRKSSSQQC  360
IMPAVGLHLN APDKEVISND ESSCGIHLNL PSCTSVQIYT SYEHQEPLAI EVDSSNIGPQ  420
PAKDNSHALD STVNDVSQNS PKKKRHGDCK RCKCKKSKCL KLYCECFAAR DYCTGNCSCK  480
DCCNKLVHKD KVIQAHKQIE SRNPLAFAPK VIPEPEIGND PNKTPAPARH KRGCNCKQSV  540
CIKKYCECFQ AGVGCSLSCR CEGCKNTFGR KEGELSLLLQ IKYPSESNYF IVSGANSMGV  600
EAQLEVETEA CGKVVEKASQ IIEVQNSDNH PDFIPISTPF PLFSSLSEVK PNTRWSQPPK  660
HSQAVSDQEM TDVLGGRGRS DRSPMTIKTS SPSGKRISTS KGELTISFPS PNHHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1645056612120Protein lin-54 homolog
5fd3_B3e-1645056612120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440455PKKKRHGDCKRCKCKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I8S67
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975430.10.0protein tesmin/TSO1-like CXC 2 isoform X3
RefseqXP_025627351.10.0protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A445ARC20.0A0A445ARC2_ARAHY; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-73TESMIN/TSO1-like CXC 2