PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IBQ2J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 392aa    MW: 43805.2 Da    PI: 9.3471
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IBQ2JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.8e-193067239
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                 ri+n++ rqvtfskRrng lKKA+ELS+L da+v +i+
  Araip.IBQ2J 30 RIDNSTSRQVTFSKRRNGFLKKAKELSILSDAKVGLIV 67
                 8***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.22E-192167IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-242175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1792167IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-152343IPR002100Transcription factor, MADS-box
PfamPF003192.8E-163067IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-154358IPR002100Transcription factor, MADS-box
PfamPF070581.5E-3475181IPR009768Microtubule-associated protein 70
Gene3DG3DSA:3.30.200.209.7E-13227297No hitNo description
SuperFamilySSF561122.82E-10227300IPR011009Protein kinase-like domain
PROSITE patternPS001070254277IPR017441Protein kinase, ATP binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007010Biological Processcytoskeleton organization
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MIQSQTQSHS SKIGTLKLIA MGRGKIAIRR IDNSTSRQVT FSKRRNGFLK KAKELSILSD  60
AKVGLIVKKI LFCETIAEKS KELETCQGEV KALRATEALK DKAIEELRNE VSKLDQKLRT  120
IENHLKDKNL EIKKLTEEKK DALAAQYAAE AALRRDDDYI PFESVITPLE DEIKLYKNES  180
IYIDIPNNTS DSEALPGSGG SNANNQWRSF FKLLKKGSQM PFQPFHFLKK NVPKLTRRKS  240
KKAATDDFSH DNVIGEGRYA EVYLGKLEYG TFVAIKKLTR GNQEEMTADF LSELGIICCI  300
LSLLIRSYHL MSSNALSKLE HIVLVHYRDI KECYKSGISH SPAAPVSLVG SSQTSSVPSS  360
VKIESPITEI QTSISSTENE VEQAGRSSVC DL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IBQ2J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444XPA30.0A0A444XPA3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2076924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.23e-20AGAMOUS-like 16