PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IDJ8V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 382aa    MW: 44424.3 Da    PI: 5.1709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IDJ8VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.49.5e-1889165176
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 
                  +fYn+YA++ GFs rk+ ++ks+ +   + ++fvC +eg+r +++   ++ +r++++etr+gC a+++++ +  +g+w
  Araip.IDJ8V  89 EFYNRYARTRGFSARKNGTRKSRASA-LKLKNFVCHREGFRPPNNYGiENLKRKPTPETRCGCSAMMEIRVDApSGRW 165
                  6********************96655.999*************99887888999****************99888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1489165IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.126229277IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024252279IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGQEFSHEGV NSEHTSYDQY EQEEEKHEEV DVDYMDEDDT NVEPMFDFHG FDEGYNIDSL  60
EDIRMIEFWN IGDEDVCHFH FSDVDIAFEF YNRYARTRGF SARKNGTRKS RASALKLKNF  120
VCHREGFRPP NNYGIENLKR KPTPETRCGC SAMMEIRVDA PSGRWWKEVQ ADLASVNGRP  180
SMQTCFQQLE RSAANVYNLS IFYMFQPILI RAASMKVINM RQTCSYVIYS VGLDRTPNEM  240
WRVFCCDIEM EFNCSCMRIE SFGIPCEHIV CVLVHEDIKE LPGSLVLPRW TKTAKVGLQN  300
AVGFHWDSLM LSQYGCLMDW FRQLANNLNN YLFMHLGIPI ALRTSQPSKF TVSCIPHSAY  360
FSDDIISERA TPYNTSVLYY LK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IDJ8V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444XLU51e-135A0A444XLU5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1401926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.29e-15FAR1-related sequence 3