PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ILH9D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9783.6 Da    PI: 8.4878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ILH9DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.2e-081049241
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  i+n+  r+++f +R+  i+KK +    LC a+ ++i+ s
  Araip.ILH9D 10 CIQNELERKISFMQRKDEIMKKISIFLKLCKAKTCLIVQS 49
                 699*******************999999*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.05E-10163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.535149IPR002100Transcription factor, MADS-box
PfamPF003195.4E-61149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGHEKVVYEC IQNELERKIS FMQRKDEIMK KISIFLKLCK AKTCLIVQSI IEKYEIQKNN  60
ETHSMIFNGE EFLKNLKIMN EA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ILH9D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186302.17e-30agamous-like MADS-box protein AGL80
TrEMBLA0A444YNI81e-37A0A444YNI8_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26580.13e-08AGAMOUS-like-34