PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IM1EJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 76aa    MW: 9213.46 Da    PI: 8.2327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IM1EJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.34.1e-163411957
                 HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  Araip.IM1EJ  3 FGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 41
                 8899*********************************96 PP
2HD-ZIP_I/II93.71.9e-302681783
  HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
                 +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lkra+++   +++rLe+e
  Araip.IM1EJ  2 NFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETE 68
                 69999***********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.155142IPR001356Homeobox domain
SMARTSM003892.6E-4246IPR001356Homeobox domain
SuperFamilySSF466893.05E-14350IPR009057Homeodomain-like
PfamPF000462.0E-13341IPR001356Homeobox domain
CDDcd000866.93E-10343No hitNo description
Gene3DG3DSA:1.10.10.602.6E-17349IPR009057Homeodomain-like
PRINTSPR000315.9E-61322IPR000047Helix-turn-helix motif
PROSITE patternPS0002701740IPR017970Homeobox, conserved site
PRINTSPR000315.9E-62238IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MNFGNEHKLE SERKDKLALE LGLDPRQVAV WFQNRRARWK NKKLEEEYSN LKRAHETTLL  60
DKCRLETEFW TTMSCD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IM1EJ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964054.12e-42homeobox-leucine zipper protein ATHB-40
RefseqXP_016201830.12e-42homeobox-leucine zipper protein ATHB-40 isoform X2
RefseqXP_020978662.12e-42homeobox-leucine zipper protein ATHB-40 isoform X1
RefseqXP_025651862.12e-42homeobox-leucine zipper protein ATHB-40
SwissprotO232083e-34ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLV7CFD82e-37V7CFD8_PHAVU; Uncharacterized protein
STRINGXP_007156908.14e-38(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-36homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]