PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IRU52
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 234aa    MW: 26810.1 Da    PI: 5.185
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IRU52genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.6e-20102191190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YA + GF vr ++ ++   +g++++r+ vC++ g+r+ee +k+e+ r +r+ tr  C a+++ ++++  ++w+v ++ +e +Hel+
  Araip.IRU52 102 RFYKTYAMMHGFAVRLDEVRRD-SDGSVIMRQIVCNRAGSRKEEVEKDERIRDHRPLTRSCCPARIHARLDTkIQQWKVVSFYEEYSHELV 191
                  5****************99998.8999********************9***********************989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-18102191IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
FNPANQALPT HLPSPTARST AATLTTAATS ILVYLRFWEM NPSDGDFFGS DSDVGFPSGD  60
DLEFLDDDSE ADEDRPQDKR IAKLSQEYIM QLQFTDEEAV YRFYKTYAMM HGFAVRLDEV  120
RRDSDGSVIM RQIVCNRAGS RKEEVEKDER IRDHRPLTRS CCPARIHARL DTKIQQWKVV  180
SFYEEYSHEL VAPLDVSMMP EYRTFSVSDK AQAKNLHDIG IRTCHILGYL AAQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IRU52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020970171.11e-144protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025684884.11e-144protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X1I11e-139A0A444X1I1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1715827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.18e-16FAR1-related sequence 11