PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IU4B8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 622aa    MW: 69143.1 Da    PI: 5.8187
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IU4B8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15422461241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCkkskClk+YCeCfaa+++C+ +C+C++C+Nk +
  Araip.IU4B8 422 DCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLD 461
                  689**********************************976 PP
2TCR505.8e-16503542140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCkks C+kkYCeCf+ag  Cs +C+C+ CkN+ 
  Araip.IU4B8 503 RHKRGCNCKKSLCQKKYCECFQAGIGCSMNCRCDACKNTF 542
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-15421462IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.028422543IPR005172CRC domain
PfamPF036385.4E-11424459IPR005172CRC domain
SMARTSM011143.8E-15503544IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-11505541IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MVMGTPERNQ INPSLSRVQD SPVFNFINGL SPIKPEKPDQ IGQTFSSLSF PSPPRAFASP  60
NLTSFKESKV LKRHNPFGKS RPGVSSEDGN KFQTSDEAIA DSCHPYHNSR ESQGNFHDGI  120
SAVDDSIALP GEHTDFSAEI PQALKYNNWG NPGYDPGHVD NSLDSIEVLN QELVRFDPKG  180
QESEHCDNLI SGDTDFFVFN SPNEAAAFKD IMQKPDSHLM SLIPESSIYN GLRDDSKAKI  240
EEYHPEPLAV IDQMQDKHYV AITSNTKDKA NVEFVSVMNG SKRRRCLDFE TANVQRKNSD  300
HNLKFDSLVH SNEKQLVAAK CNSSSQQCTM PAVGLDLNAL AALKGGKKVI SNDNWSCGIH  360
VNLPSCTSLQ IYNSHEYQDP LAMEVDLSDI GPQPIEDSSY ASDFTVDEDV NQNSPQKKRH  420
GDCKRCNCKK SKCLKLYCEC FAARTYCTGN CSCKNCHNKL DHREEVLQAR KQIESRNPLA  480
FTPKVISEPE IGNDPNKTPA PSRHKRGCNC KKSLCQKKYC ECFQAGIGCS MNCRCDACKN  540
TFGRKDGVET QPEVEIEACD KEVVESSLQK IEIQNFDGVS SSLNFLSEEK IFGTLCSQPF  600
EHSQAVSDQE MIDIFGERGR SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1742454012120Protein lin-54 homolog
5fd3_B5e-1742454012120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IU4B8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978940.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A444Z7R60.0A0A444Z7R6_ARAHY; Uncharacterized protein
STRINGGLYMA11G00920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-80TESMIN/TSO1-like CXC 2