PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.IW5LR

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 228aa MW: 26644.5 Da PI: 7.6871

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.IW5LR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	29.8	1.1e-09	41	78	73	118
CG-1 73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 L g+v+vl+cyYah+e+n++fqr ++ e+ivlvhy+++k Araip.IW5LR 41 LWAGNVDVLNCYYAHGEDNENFQR-------KS-EHIVLVHYRDTK 78 56799*****************.......34.7*****9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03859	1.4E-6	41	76	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MLRIVCKNIA VMSPECSTSM GVATLATLIS IRNGIIVTIA LWAGNVDVLN CYYAHGEDNE 60 NFQRKSEHIV LVHYRDTKEQ WSRWQRRKPD ADTVFLKAMA EIGQVKLYGE HPTLIEMSLY 120 RARRHLYKEE RLQAEEDKLE EIGPMAYYSE WVKAWKGDTS REAIQKHFKE TGEDETAQLI 180 EMFSHQTDRE YRIMIGTDVH IKRDPLAMRM KEKQIKKSQG QASHTLWL

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in plastid gene expression (PubMed:16326926). Required in the nucleus for the initiation of photomorphogenesis mediated by phytochromes (PHYs) (e.g. PHYA and PHYB) by mediating PHYs localization to photobodies, especially in response to red and far-red light, and implicating phytochrome nuclear bodies as sites of proteolysis for PHYs and PIFs proteins (e.g. PIF1 and PIF3). Acts downstream of PHYs and upstream of DET1 (PubMed:20603003, PubMed:22895253). {ECO:0000269\|PubMed:16326926, ECO:0000269\|PubMed:20603003, ECO:0000269\|PubMed:22895253}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.IW5LR

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by light at the post-translational level; constitutively expressed at transcript level, but accumulates in response to light (e.g. red, far red, blue and white light) at protein level. {ECO:0000269\|PubMed:20603003, ECO:0000269\|PubMed:22895253}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020971693.1	1e-110	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like
Swissprot	F4IHY7	7e-78	PTA12_ARATH; Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
TrEMBL	A0A444WWP9	1e-87	A0A444WWP9_ARAHY; Uncharacterized protein
STRING	PGSC0003DMT400054354	5e-79	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-11	signal responsive 1

Publications ? help Back to Top
Chen M, et al. Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell, 2010. 141(7): p. 1230-40 [PMID:20603003] Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Steiner S,Schröter Y,Pfalz J,Pfannschmidt T Identification of essential subunits in the plastid-encoded RNA polymerase complex reveals building blocks for proper plastid development. Plant Physiol., 2011. 157(3): p. 1043-55 [PMID:21949211] Gao ZP, et al. A functional component of the transcriptionally active chromosome complex, Arabidopsis pTAC14, interacts with pTAC12/HEMERA and regulates plastid gene expression. Plant Physiol., 2011. 157(4): p. 1733-45 [PMID:22010110] Gao ZP,Chen GX,Yang ZN Regulatory role of Arabidopsis pTAC14 in chloroplast development and plastid gene expression. Plant Signal Behav, 2012. 7(10): p. 1354-6 [PMID:22902688] Yu QB, et al. TAC7, an essential component of the plastid transcriptionally active chromosome complex, interacts with FLN1, TAC10, TAC12 and TAC14 to regulate chloroplast gene expression in Arabidopsis thaliana. Physiol Plant, 2013. 148(3): p. 408-21 [PMID:23082802] Nevarez PA, et al. Mechanism of Dual Targeting of the Phytochrome Signaling Component HEMERA/pTAC12 to Plastids and the Nucleus. Plant Physiol., 2017. 173(4): p. 1953-1966 [PMID:28232584] Lahari T,Lazaro J,Schroeder DF RAD4 and RAD23/HMR Contribute to Arabidopsis UV Tolerance. Genes (Basel), 2018. [PMID:29283431] Qiu Y,Li M,Kim RJ,Moore CM,Chen M Daytime temperature is sensed by phytochrome B in Arabidopsis through a transcriptional activator HEMERA. Nat Commun, 2019. 10(1): p. 140 [PMID:30635559]